Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 76target gene predictions
  • 44candidate regulatory elements
  • 21chromatin state
  • 11binding sites
  • 10accessible chromatin
  • 10gene expression
  • 8histone modifications
Date released
  • 60September, 2022
  • 51February, 2024
  • 42February, 2021
  • 8August, 2021
  • 8June, 2020
  • 7May, 2021
  • 2November, 2021
  • 1August, 2017
  • 1October, 2022
Available data
  • 150bed bed3+
  • 20bed bed9
  • 10tsv
  • 2bigWig
Organism
  • 180Homo sapiens
Collection Tags
  • 60EpiMap
  • 514DN
  • 26ChIP-Atlas
  • 25ENCODE
  • 12AMP
  • 5DGA
  • 2T2DKP
Biosample type
  • 127cell line
  • tissue
  • 30in vitro differentiated cells
  • 22primary cell
  • 1stem cell
Organ
  • 897epithelium
  • 375connective tissue
  • 351kidney
  • 214bodily fluid
  • 204blood
  • 185vasculature
  • 180embryo
  • 179skin of body
  • 163pancreas
  • 130lung
  • 120blood vessel
  • 117brain
  • 100liver
  • 85mammary gland
  • 70uterus
  • 69musculature of body
  • 67bone element
  • 63prostate gland
  • 62lymph node
  • 62penis
  • 57intestine
  • 48extraembryonic component
  • 43heart
  • 40large intestine
  • 39eye
  • 33artery
  • 24lymphatic vessel
  • 22vein
  • 16bronchus
  • 13bone marrow
  • 13placenta
  • 11adrenal gland
  • 11gonad
  • 11stomach
  • 10esophagus
  • 10pituitary gland
  • 8limb
  • 8mouth
  • 8testis
  • 7spinal cord
  • 6lymphoid tissue
  • 5adipose tissue
  • 5trachea
  • 4nose
  • 4small intestine
  • 3thyroid gland
  • 2ovary
  • 1pericardium
  • 1thymus
Project
  • 178AMP
  • 2ENCODE
Genome assembly (visualization)
  • 170hg19
  • 73GRCh38
biosample_type!
  • tissue
BIOSAMPLE
TYPE

180 results

search-icontable-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
binding sites
accessible chromatin
gene expression
histone modifications
cell line
H1-hESC39112181
H9871
H7-hESC21111
HUES612111
HUES8411
in vitro differentiated cells
endodermal cell242
mesodermal cell1411
trophoblast cell221
ectodermal cell121
cardiac mesoderm primordium111
primary cell
trophoblast cell57411
primordial germ cell11
placental hematopoietic stem cell1
trophoblast giant cell1
stem cell
H1-hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego