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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 57total RNA-seq
  • 11ChIP-seq
  • 8ATAC-seq
  • 3DNase-seq
  • 1RRBS
Assay category
  • 57Transcription
  • 11DNA accessibility
  • 11DNA binding
  • 1DNA methylation
Target of assay
  • 5transcription factor
  • 4control
  • 2histone
  • 2histone modification
  • 2narrow histone mark
  • 1RNA binding protein
Date released
  • 66February, 2021
  • 8June, 2019
  • 5July, 2019
  • 1May, 2021
Available data
  • 79bam
  • 67bigWig
  • 57tsv
  • 18bed narrowPeak
  • 6bigBed narrowPeak
  • 6tagAlign
  • 3bed bed3+
  • 3bed broadPeak
  • 3bigBed broadPeak
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 80Homo sapiens
Biosample type
  • tissue
  • 66cell line
  • 13primary cell
  • 1in vitro differentiated cells
Organ
  • 509epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 80AMP
Genome assembly (visualization)
  • 75GRCh38
  • 75hg19
Lab
  • 80AMP-T2D consortium
Audit category:
  • 6inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

80 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RRBS
cell line
smooth muscle cell of the coronary artery5268
primary cell
cardiac fibroblast531
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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