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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 25ChIP-seq
  • 13DNase-seq
  • 10total RNA-seq
  • 3RRBS
  • 2STARR-seq
  • 2pCHi-C
Assay category
  • 25DNA binding
  • 13DNA accessibility
  • 10Transcription
  • 3DNA methylation
Target of assay
  • 10histone
  • 10histone modification
  • 9transcription factor
  • 7recombinant protein
  • 6control
  • 5broad histone mark
  • 5narrow histone mark
  • 2RNA binding protein
Date released
  • 26October, 2019
  • 13June, 2019
  • 7July, 2019
  • 5May, 2019
  • 2August, 2021
  • 2March, 2020
Available data
  • 46bam
  • 40bigWig
  • 30bed narrowPeak
  • 17bigBed narrowPeak
  • 12tsv
  • 10bed bed3+
  • 10bed broadPeak
  • 10bigBed broadPeak
  • 3bed bedMethyl
  • 3bigBed bedMethyl
Organism
  • 55Homo sapiens
Biosample type
  • tissue
  • 36primary cell
  • 19cell line
Organ
  • 509epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 55AMP
Genome assembly (visualization)
  • 40GRCh38
  • 37hg19
Lab
  • 53AMP-T2D consortium
  • 2Bing Ren, UCSD
Audit category:
  • 23inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

55 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
RRBS
STARR-seq
pCHi-C
primary cell
epithelial cell of proximal tubule10111
kidney epithelial cell5111
kidney tubule cell31
kidney glomerular epithelial cell21
renal cortical epithelial cell111
cell line
RCC 7860 HIF1a re-expression41
RCC 7860 vector311
RCC 7860 HIF2a over-expression31
HEK293T2
glomerular visceral epithelial cell11
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