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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 114total RNA-seq
  • 101ChIP-seq
  • 90ATAC-seq
  • 74single cell RNA-seq
  • 47WGBS
  • 6MeRIP-seq
  • 5Hi-C
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNase-seq
Assay category
  • 188Transcription
  • 101DNA binding
  • 91DNA accessibility
  • 47DNA methylation
  • 53D chromatin structure
Target of assay
  • 78histone
  • 78histone modification
  • 41narrow histone mark
  • 37broad histone mark
  • 24control
  • 3nucleotide modification
  • 2transcription factor
  • 1RNA binding protein
Date released
  • 80May, 2022
  • 72September, 2018
  • 41August, 2017
  • 38February, 2023
  • 37July, 2018
  • 33April, 2018
  • 32February, 2021
  • 24May, 2021
  • 19September, 2020
  • 16November, 2019
  • 15October, 2019
  • 7August, 2020
  • 6November, 2020
  • 5March, 2020
  • 5September, 2017
  • 3August, 2018
  • 3October, 2022
  • 2August, 2021
  • 2October, 2018
  • 1June, 2018
Available data
  • 260bam
  • 258fastq
  • 250bigWig
  • 142tsv
  • 91bed narrowPeak
  • 80zippedFastqFolder
  • 29bigBed narrowPeak
  • 4bedpe bed3+
  • 4hic
  • 3cool
  • 3tagAlign
  • 2bed bed3+
  • 1bed broadPeak
  • 1bigBed broadPeak
  • 1hdf5
Organism
  • 440Homo sapiens
Biosample type
  • tissue
  • 346primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 509epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 285AMP
  • 152HPAP
  • 4T1D
Genome assembly (visualization)
  • 249GRCh38
  • 245hg19
Lab
  • 283AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 81inconsistent ontology term
  • 3audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

441 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
MeRIP-seq
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
pancreatic endocrine cell23
cell line
EndoC_BH13315196121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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