Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 54total RNA-seq
  • 29ChIP-seq
  • 8ATAC-seq
  • 6DNase-seq
  • 4Hi-C
  • 1FAIRE-seq
  • 1RRBS
Assay category
  • 54Transcription
  • 29DNA binding
  • 15DNA accessibility
  • 43D chromatin structure
  • 1DNA methylation
Target of assay
  • 17histone
  • 17histone modification
  • 9broad histone mark
  • 8narrow histone mark
  • 6control
  • 6transcription factor
  • 2RNA binding protein
Date released
  • 66February, 2021
  • 21October, 2019
  • 6November, 2017
  • 5July, 2019
  • 4June, 2019
  • 1March, 2020
Available data
  • 98bam
  • 85bigWig
  • 54tsv
  • 33bed narrowPeak
  • 21bigBed narrowPeak
  • 12bed broadPeak
  • 12bigBed broadPeak
  • 8bed bed3+
  • 6fastq
  • 6tagAlign
  • 2hdf5
  • 2hic
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 103Homo sapiens
Biosample type
  • tissue
  • 66cell line
  • 37primary cell
Organ
  • 509epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 103AMP
Genome assembly (visualization)
  • 95hg19
  • 86GRCh38
Lab
  • 103AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

103 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery5268
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego