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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 432total RNA-seq
  • 186single cell RNA-seq
  • 6MeRIP-seq
  • 5STARR-seq
  • 2small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 624Transcription
Target of assay
  • 3control
  • 3nucleotide modification
Date released
  • 143May, 2021
  • 112February, 2021
  • 81February, 2023
  • 56September, 2020
  • 48July, 2018
  • 43April, 2018
  • 33May, 2022
  • 29August, 2021
  • 27September, 2018
  • 15February, 2018
  • 10November, 2020
  • 8October, 2019
  • 7December, 2019
  • 6March, 2020
  • 4March, 2023
  • 3August, 2018
  • 3June, 2018
  • 2July, 2019
  • 2May, 2020
  • 2October, 2018
  • 1November, 2018
  • 1November, 2019
  • 1October, 2022
Available data
  • 427tsv
  • 418bigWig
  • 416bam
  • 263fastq
  • 52zippedFastqFolder
  • 2bed bed3+
  • 2csv
  • 1txt
Organism
  • 631Homo sapiens
Biosample type
  • tissue
  • 374primary cell
  • 138in vitro differentiated cells
  • 123cell line
  • 2stem cell
Organ
  • 201epithelium
  • 195pancreas
  • 53heart
  • 52artery
  • 52blood vessel
  • 52vasculature
  • 18connective tissue
  • 16liver
  • 14embryo
  • 8kidney
  • 1adipose tissue
  • 1musculature of body
Project
  • 403AMP
  • 177HPAP
  • 53T1D
  • 4community
Genome assembly (visualization)
  • 418hg19
  • 416GRCh38
Lab
  • 378AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 58Kyle Gaulton, UCSD
  • 14Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
Audit category:
  • 141inconsistent ontology term
  • 2audit script error
biosample_type!
  • tissue
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

637 results

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Clear Filters
total RNA-seq
single cell RNA-seq
MeRIP-seq
STARR-seq
small RNA-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH13361
HepG292
H1-hESC8
EndoC-BH111
stem cell
SB Ad3.111
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