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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 964ChIP-seq
  • 271ATAC-seq
  • 64total RNA-seq
  • 56snATAC-seq
  • 48WGBS
  • 34DNase-seq
  • 32pCHi-C
  • 18Hi-C
  • 10RRBS
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 964DNA binding
  • 362DNA accessibility
  • 71Transcription
  • 59DNA methylation
  • 183D chromatin structure
  • 1DNA sequencing
Target of assay
  • 420transcription factor
  • 389histone
  • 389histone modification
  • 198broad histone mark
  • 190narrow histone mark
  • 153control
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 324November, 2017
  • 216May, 2021
  • 146May, 2020
  • 127August, 2017
  • 101May, 2022
  • 64October, 2019
  • 61August, 2021
  • 61November, 2018
  • 58February, 2021
  • 55June, 2019
  • 46December, 2017
  • 46September, 2018
  • 30February, 2023
  • 29July, 2019
  • 28December, 2018
  • 24February, 2018
  • 23January, 2019
  • 20November, 2019
  • 18March, 2020
  • 8January, 2021
  • 7August, 2020
  • 6January, 2018
  • 5March, 2023
  • 5May, 2019
  • 5September, 2017
  • 4October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
Available data
  • 1069bam
  • 979bigWig
  • 833bed narrowPeak
  • 718fastq
  • 481bigBed narrowPeak
  • 160tagAlign
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 101zippedFastqFolder
  • 97tsv
  • 66bed bed3+
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1vcf
Organism
  • 1517Homo sapiens
Biosample type
  • tissue
  • 714primary cell
  • 543cell line
  • 256in vitro differentiated cells
  • 10stem cell
Organ
  • 414liver
  • 309epithelium
  • 247pancreas
  • 119connective tissue
  • 69blood
  • 69bodily fluid
  • 51vasculature
  • 47kidney
  • 45blood vessel
  • 27heart
  • 23embryo
  • 22vein
  • 21brain
  • 16artery
  • 13musculature of body
  • 5eye
  • 2adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 1211AMP
  • 160T1D
  • 147HPAP
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1040hg19
  • 852GRCh38
  • 5hg18
Lab
  • 1111AMP-T2D consortium
  • 233Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 20Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 121inconsistent ontology term
  • 31audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 63missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • tissue
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

1523 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
FAIRE-seq
MPRA
...and 3 more
primary cell
monocyte8515211
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
cell line
HepG237815122
GM12878601
EndoC_BH1151912321
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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