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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 432total RNA-seq
  • 186single cell RNA-seq
  • 6MeRIP-seq
  • 5STARR-seq
  • 2small RNA-seq
Assay category
  • 620Transcription
Target of assay
  • 3control
  • 3nucleotide modification
Date released
  • 143May, 2021
  • 112February, 2021
  • 80February, 2023
  • 56September, 2020
  • 48July, 2018
  • 43April, 2018
  • 33May, 2022
  • 29August, 2021
  • 27September, 2018
  • 15February, 2018
  • 10November, 2020
  • 8October, 2019
  • 7December, 2019
  • 6March, 2020
  • 3August, 2018
  • 3June, 2018
  • 2July, 2019
  • 2May, 2020
  • 2October, 2018
  • 1November, 2018
  • 1November, 2019
Available data
  • 427tsv
  • 418bigWig
  • 416bam
  • 263fastq
  • 52zippedFastqFolder
  • 2bed bed3+
  • 2csv
Organism
  • 631Homo sapiens
Biosample type
  • tissue
  • 374primary cell
  • 138in vitro differentiated cells
  • 119cell line
Organ
  • 200epithelium
  • 194pancreas
  • 53heart
  • 52artery
  • 52blood vessel
  • 52vasculature
  • 18connective tissue
  • 16liver
  • 14embryo
  • 8kidney
  • 1adipose tissue
  • 1musculature of body
Project
  • 401AMP
  • 177HPAP
  • 53T1D
Genome assembly (visualization)
  • 418hg19
  • 416GRCh38
Lab
  • 376AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 58Kyle Gaulton, UCSD
  • 14Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 141inconsistent ontology term
  • 2audit script error
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

631 results

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Clear Filters
total RNA-seq
single cell RNA-seq
MeRIP-seq
STARR-seq
small RNA-seq
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1336
HepG292
H1-hESC8
HEK293T2
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