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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 460ChIP-seq
  • 448total RNA-seq
  • 200ATAC-seq
  • 183single cell RNA-seq
  • 56snATAC-seq
  • 41WGBS
  • 13DNase-seq
  • 12pCHi-C
  • 8Hi-C
  • 5GRO-seq
  • 4Capture-C
  • 2HiChIP
  • 2small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 637Transcription
  • 460DNA binding
  • 269DNA accessibility
  • 42DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 297histone
  • 297histone modification
  • 153broad histone mark
  • 143narrow histone mark
  • 99control
  • 64transcription factor
  • 13RNA binding protein
  • 4chromatin remodeller
  • 1recombinant protein
Date released
  • 346May, 2021
  • 138February, 2021
  • 134May, 2022
  • 107August, 2017
  • 104February, 2023
  • 92May, 2020
  • 76August, 2021
  • 73September, 2018
  • 59September, 2020
  • 47July, 2018
  • 43April, 2018
  • 39February, 2018
  • 29November, 2017
  • 24June, 2019
  • 20October, 2019
  • 17November, 2019
  • 16December, 2017
  • 14July, 2019
  • 8January, 2021
  • 8March, 2020
  • 7August, 2020
  • 6January, 2018
  • 6November, 2020
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4November, 2018
  • 4October, 2022
  • 3June, 2018
  • 2January, 2019
  • 2October, 2018
  • 1May, 2019
Available data
  • 902bam
  • 857bigWig
  • 523fastq
  • 458tsv
  • 365bed narrowPeak
  • 153zippedFastqFolder
  • 134tagAlign
  • 45bigBed narrowPeak
  • 30bed bed3+
  • 11bed broadPeak
  • 11bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 3cool
  • 2csv
  • 1txt
  • 1vcf
Organism
  • 1437Homo sapiens
Biosample type
  • tissue
  • 914primary cell
  • 323in vitro differentiated cells
  • 199cell line
  • 7stem cell
Organ
  • 421epithelium
  • 409pancreas
  • 126connective tissue
  • 74heart
  • 73vasculature
  • 72blood vessel
  • 66artery
  • 61liver
  • 26embryo
  • 21kidney
  • 13blood
  • 13bodily fluid
  • 4brain
  • 4musculature of body
  • 4vein
  • 3adipose tissue
  • 1eye
  • 1pericardium
Project
  • 926AMP
  • 318HPAP
  • 194T1D
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 892hg19
  • 781GRCh38
  • 5hg18
Lab
  • 812AMP-T2D consortium
  • 318Klaus Kaestner, Upenn
  • 276Kyle Gaulton, UCSD
  • 28Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
  • 4Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 179inconsistent ontology term
  • 31audit script error
Audit category:
  • 51missing controlled_by
Audit category:
  • 17inconsistent control read length
biosample_type!
  • tissue
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

1443 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
HiChIP
small RNA-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
MPRA
STARR-seq
shRNA RNA-seq
...and 2 more
primary cell
monocyte8554151
pancreatic alpha cell13523512251
Langerhans cell8548
pancreatic beta cell12212312161
CD8-positive, alpha-beta T cell33421
in vitro differentiated cells
adipocyte67541
cardiomyocytes359
embryonic stem cell40751
neural progenitor cell21710
pancreatic endoderm1541
cell line
EndoC_BH11331171221
smooth muscle cell of the coronary artery4528
HepG24391
GM1287841
EndoC-BH11
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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