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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 604ChIP-seq
  • 179total RNA-seq
  • 150ATAC-seq
  • 86single cell RNA-seq
  • 28pCHi-C
  • 26DNase-seq
  • 15Hi-C
  • 10RRBS
  • 7WGBS
  • 6MeRIP-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2small RNA-seq
  • 2snATAC-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 604DNA binding
  • 267Transcription
  • 179DNA accessibility
  • 18DNA methylation
  • 153D chromatin structure
Target of assay
  • 373transcription factor
  • 165histone
  • 165histone modification
  • 88recombinant protein
  • 87narrow histone mark
  • 78RNA binding protein
  • 78broad histone mark
  • 67control
  • 30chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 145May, 2021
  • 144May, 2020
  • 60August, 2021
  • 58November, 2018
  • 58October, 2019
  • 43July, 2018
  • 41June, 2019
  • 35February, 2021
  • 33April, 2018
  • 31July, 2019
  • 30December, 2017
  • 28December, 2018
  • 27August, 2017
  • 24February, 2023
  • 21January, 2019
  • 20March, 2020
  • 7December, 2019
  • 6November, 2020
  • 4May, 2019
  • 4November, 2019
  • 3August, 2018
  • 3October, 2022
  • 2January, 2021
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 928bam
  • 872bigWig
  • 558bed narrowPeak
  • 543fastq
  • 447bigBed narrowPeak
  • 282tsv
  • 101bed broadPeak
  • 101bigBed broadPeak
  • 96tagAlign
  • 57bed bed3+
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 10bedpe bed3+
  • 9hic
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 3txt
  • 2bed bed3
  • 2ibed
  • 1csv
Organism
  • 1126Homo sapiens
Biosample type
  • 476primary cell
  • 463cell line
  • tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 373liver
  • 169epithelium
  • 99pancreas
  • 58blood
  • 58bodily fluid
  • 53connective tissue
  • 44kidney
  • 33vasculature
  • 28blood vessel
  • 19vein
  • 17brain
  • 13embryo
  • 12heart
  • 12musculature of body
  • 4artery
  • 4eye
  • 2adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 981AMP
  • 135T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 915hg19
  • 778GRCh38
Lab
  • 946AMP-T2D consortium
  • 151Kyle Gaulton, UCSD
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 6Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 1ITG
Audit category:
  • 130inconsistent ontology term
  • 5audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 37inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • tissue
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1126 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
Hi-C
RRBS
WGBS
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
small RNA-seq
snATAC-seq
DNAme array
FAIRE-seq
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
cell line
HepG2335512112
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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