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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 100ChIP-seq
  • 80single cell RNA-seq
  • 79ATAC-seq
  • 8pCHi-C
  • 5DNase-seq
  • 5Hi-C
  • 2Capture-C
  • 2small RNA-seq
  • 2snATAC-seq
  • 1DNAme array
Assay category
  • 213Transcription
  • 100DNA binding
  • 86DNA accessibility
  • 53D chromatin structure
  • 1DNA methylation
Target of assay
  • 73histone
  • 73histone modification
  • 40narrow histone mark
  • 33broad histone mark
  • 17transcription factor
  • 10control
  • 5RNA binding protein
Date released
  • 132May, 2021
  • 88May, 2020
  • 46August, 2021
  • 42July, 2018
  • 33April, 2018
  • 18February, 2023
  • 14July, 2019
  • 10June, 2019
  • 7August, 2017
  • 6October, 2019
  • 4March, 2020
  • 3August, 2018
  • 3February, 2021
  • 3October, 2022
  • 2January, 2021
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 345bam
  • 332bigWig
  • 216tsv
  • 90bed narrowPeak
  • 85fastq
  • 70tagAlign
  • 19bed bed3+
  • 11bigBed narrowPeak
  • 5hic
  • 4bedpe bed3+
  • 3bed broadPeak
  • 3bigBed broadPeak
  • 3cool
  • 1bed bed3
  • 1csv
Organism
  • 415Homo sapiens
Biosample type
  • 302primary cell
  • tissue
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • 81epithelium
  • 67pancreas
  • 42connective tissue
  • 10kidney
  • 6heart
  • 4liver
  • 3blood vessel
  • 3vasculature
  • 2adipose tissue
  • 2artery
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2musculature of body
  • 1pericardium
  • 1vein
Project
  • 295AMP
  • 116T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 349hg19
  • 291GRCh38
Lab
  • 271AMP-T2D consortium
  • 136Kyle Gaulton, UCSD
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 47inconsistent ontology term
  • 3audit script error
Audit category:
  • 4inconsistent control read length
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

415 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
pCHi-C
DNase-seq
Hi-C
Capture-C
small RNA-seq
snATAC-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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