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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 504ChIP-seq
  • 71ATAC-seq
  • 48total RNA-seq
  • 21DNase-seq
  • 20pCHi-C
  • 10Hi-C
  • 10RRBS
  • 7WGBS
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 504DNA binding
  • 93DNA accessibility
  • 54Transcription
  • 17DNA methylation
  • 103D chromatin structure
Target of assay
  • 356transcription factor
  • 92histone
  • 92histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 57control
  • 47narrow histone mark
  • 45broad histone mark
  • 30chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 58November, 2018
  • 56May, 2020
  • 52October, 2019
  • 32February, 2021
  • 31June, 2019
  • 30December, 2017
  • 28December, 2018
  • 21January, 2019
  • 20August, 2017
  • 17July, 2019
  • 16March, 2020
  • 14August, 2021
  • 13May, 2021
  • 7December, 2019
  • 6February, 2023
  • 6November, 2020
  • 4May, 2019
  • 4November, 2019
  • 1July, 2018
Available data
  • 583bam
  • 540bigWig
  • 468bed narrowPeak
  • 458fastq
  • 436bigBed narrowPeak
  • 98bed broadPeak
  • 98bigBed broadPeak
  • 66tsv
  • 38bed bed3+
  • 26tagAlign
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 711Homo sapiens
Biosample type
  • 463cell line
  • 174primary cell
  • tissue
  • 71in vitro differentiated cells
  • 3stem cell
Organ
  • 369liver
  • 88epithelium
  • 56blood
  • 56bodily fluid
  • 34kidney
  • 32pancreas
  • 30vasculature
  • 25blood vessel
  • 18vein
  • 17brain
  • 11connective tissue
  • 11embryo
  • 10musculature of body
  • 6heart
  • 4eye
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1mammary gland
Project
  • 686AMP
  • 19T1D
  • 6HPAP
Genome assembly (visualization)
  • 566hg19
  • 487GRCh38
Lab
  • 675AMP-T2D consortium
  • 15Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 83inconsistent ontology term
  • 2audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

711 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG2335152112
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15121
endothelial cell of umbilical vein1611
macrophage11
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC3
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