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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 360ChIP-seq
  • 317total RNA-seq
  • 121ATAC-seq
  • 103single cell RNA-seq
  • 54snATAC-seq
  • 41WGBS
  • 8DNase-seq
  • 5GRO-seq
  • 4pCHi-C
  • 3Hi-C
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 424Transcription
  • 360DNA binding
  • 183DNA accessibility
  • 41DNA methylation
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 224histone
  • 224histone modification
  • 120broad histone mark
  • 103narrow histone mark
  • 89control
  • 47transcription factor
  • 8RNA binding protein
  • 4chromatin remodeller
  • 1recombinant protein
Date released
  • 214May, 2021
  • 135February, 2021
  • 134May, 2022
  • 100August, 2017
  • 86February, 2023
  • 72September, 2018
  • 59September, 2020
  • 38February, 2018
  • 30August, 2021
  • 29November, 2017
  • 17November, 2019
  • 16December, 2017
  • 14June, 2019
  • 14October, 2019
  • 10April, 2018
  • 7August, 2020
  • 6January, 2018
  • 6January, 2021
  • 6November, 2020
  • 5July, 2018
  • 5September, 2017
  • 4March, 2020
  • 4March, 2023
  • 4May, 2020
  • 4November, 2018
  • 2January, 2019
  • 2June, 2018
  • 2October, 2018
  • 1August, 2018
  • 1May, 2019
  • 1October, 2022
Available data
  • 557bam
  • 525bigWig
  • 438fastq
  • 275bed narrowPeak
  • 242tsv
  • 153zippedFastqFolder
  • 64tagAlign
  • 34bigBed narrowPeak
  • 11bed bed3+
  • 8bed broadPeak
  • 8bigBed broadPeak
  • 5bed bed3
  • 3bedpe bed3+
  • 3hic
  • 1csv
  • 1txt
  • 1vcf
Organism
  • 1022Homo sapiens
Biosample type
  • tissue
  • 612primary cell
  • 211in vitro differentiated cells
  • 199cell line
  • 6stem cell
Organ
  • 342pancreas
  • 340epithelium
  • 84connective tissue
  • 70vasculature
  • 69blood vessel
  • 68heart
  • 64artery
  • 57liver
  • 24embryo
  • 11blood
  • 11bodily fluid
  • 11kidney
  • 4brain
  • 3vein
  • 2musculature of body
  • 1adipose tissue
  • 1eye
Project
  • 631AMP
  • 315HPAP
  • 78T1D
  • 4community
Genome assembly (visualization)
  • 543hg19
  • 490GRCh38
  • 5hg18
Lab
  • 541AMP-T2D consortium
  • 315Klaus Kaestner, Upenn
  • 140Kyle Gaulton, UCSD
  • 28Bing Ren, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 132inconsistent ontology term
  • 28audit script error
Audit category:
  • 51missing controlled_by
Audit category:
  • 13inconsistent control read length
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

1028 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
pCHi-C
Hi-C
Capture-C
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
STARR-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell135235125
monocyte382813
pancreatic beta cell122123116
exocrine cell39
in vitro differentiated cells
adipocyte604
cardiomyocytes347
embryonic stem cell2921
pancreatic endoderm1541
definitive endodermal cell521
cell line
EndoC_BH11331171221
smooth muscle cell of the coronary artery4528
HepG243911
GM1287841
EndoC-BH111
stem cell
SB Ad3.111
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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