Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 86ChIP-seq
Assay category
  • 86DNA binding
Target of assay
  • 420transcription factor
  • 389histone
  • 389histone modification
  • 198broad histone mark
  • 190narrow histone mark
  • 156control
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 37November, 2017
  • 21November, 2018
  • 6August, 2017
  • 6January, 2019
  • 5May, 2021
  • 4June, 2019
  • 2December, 2017
  • 2December, 2018
  • 1August, 2021
  • 1May, 2019
  • 1November, 2019
Available data
  • 80bam
  • 79bed narrowPeak
  • 79bigWig
  • 74fastq
  • 73bigBed narrowPeak
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 1tar
Organism
  • 86Homo sapiens
Biosample type
  • 65cell line
  • tissue
  • 11in vitro differentiated cells
  • 10primary cell
Organ
  • 56liver
  • 10blood
  • 10bodily fluid
  • 8epithelium
  • 5connective tissue
  • 3brain
  • 2kidney
  • 2vasculature
  • 1blood vessel
  • 1eye
  • 1heart
  • 1pancreas
Project
  • 86AMP
Genome assembly (visualization)
  • 78hg19
  • 73GRCh38
Lab
  • 80AMP-T2D consortium
  • 5Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 3inconsistent control run_type
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

86 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
cell line
HepG254
GM1287810
EndoC_BH11
in vitro differentiated cells
embryonic stem cell5
adipocyte4
hepatocyte2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego