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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 198ChIP-seq
Assay category
  • 198DNA binding
Target of assay
  • 420transcription factor
  • 389histone
  • 389histone modification
  • 198broad histone mark
  • 190narrow histone mark
  • 156control
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 76May, 2021
  • 36August, 2017
  • 17September, 2018
  • 16October, 2019
  • 12December, 2017
  • 9August, 2021
  • 8February, 2018
  • 8June, 2019
  • 8November, 2017
  • 6November, 2019
  • 2May, 2019
Available data
  • 174bigWig
  • 167bed narrowPeak
  • 156bam
  • 73fastq
  • 71tagAlign
  • 38bigBed narrowPeak
  • 16bed broadPeak
  • 16bigBed broadPeak
  • 6bed bed3+
Organism
  • 198Homo sapiens
Biosample type
  • tissue
  • 122primary cell
  • 56in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 44epithelium
  • 37pancreas
  • 24connective tissue
  • 17liver
  • 9blood vessel
  • 9vasculature
  • 9vein
  • 5kidney
  • 4embryo
  • 4musculature of body
Project
  • 154AMP
  • 44T1D
Genome assembly (visualization)
  • 173hg19
  • 150GRCh38
Lab
  • 123AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 21missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

198 results

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Clear Filters
ChIP-seq
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
in vitro differentiated cells
adipocyte20
embryonic stem cell11
hepatocyte7
neural progenitor cell7
pancreatic endoderm4
cell line
HepG29
EndoC_BH16
Panc14
stem cell
hESC1
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