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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 150ChIP-seq
  • 3MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 150DNA binding
  • 3Transcription
Target of assay
  • 420transcription factor
  • 389histone
  • 389histone modification
  • 198broad histone mark
  • 190narrow histone mark
  • 156control
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 59November, 2017
  • 21August, 2017
  • 12August, 2021
  • 12October, 2019
  • 9December, 2017
  • 9May, 2021
  • 8February, 2018
  • 8June, 2019
  • 3February, 2021
  • 3January, 2019
  • 3July, 2019
  • 3November, 2018
  • 3November, 2020
  • 2November, 2019
  • 1May, 2019
Available data
  • 139bam
  • 101fastq
  • 23bigWig
  • 16tagAlign
  • 6bed bed3+
  • 3tsv
Organism
  • 156Homo sapiens
Biosample type
  • tissue
  • 83cell line
  • 37in vitro differentiated cells
  • 35primary cell
  • 1stem cell
Organ
  • 62liver
  • 30epithelium
  • 24pancreas
  • 11connective tissue
  • 7embryo
  • 6blood
  • 6bodily fluid
  • 6brain
  • 6kidney
  • 6vasculature
  • 5blood vessel
  • 4heart
  • 2artery
  • 2musculature of body
  • 2vein
  • 1eye
Project
  • 156AMP
Genome assembly (visualization)
  • 29hg19
  • 9GRCh38
Lab
  • 141AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 3Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 15inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

156 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
cell line
HepG260
GM128786
Panc16
EndoC_BH123
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte8
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm5
Hepatic endoderm2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
stem cell
hESC1
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