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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 389ChIP-seq
Assay category
  • 389DNA binding
Target of assay
  • 420transcription factor
  • 389histone
  • 389histone modification
  • 198broad histone mark
  • 190narrow histone mark
  • 156control
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 140May, 2021
  • 75August, 2017
  • 32September, 2018
  • 28October, 2019
  • 26December, 2017
  • 20August, 2021
  • 19June, 2019
  • 18November, 2017
  • 16February, 2018
  • 10November, 2019
  • 3May, 2019
  • 1January, 2019
  • 1March, 2020
Available data
  • 347bigWig
  • 331bed narrowPeak
  • 319bam
  • 156fastq
  • 135tagAlign
  • 79bigBed narrowPeak
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 13bed bed3+
Organism
  • 389Homo sapiens
Biosample type
  • tissue
  • 237primary cell
  • 112in vitro differentiated cells
  • 38cell line
  • 2stem cell
Organ
  • 93epithelium
  • 78pancreas
  • 45connective tissue
  • 33liver
  • 17vasculature
  • 16blood vessel
  • 15vein
  • 12embryo
  • 10kidney
  • 8musculature of body
  • 3brain
  • 2heart
  • 1blood
  • 1bodily fluid
  • 1eye
Project
  • 303AMP
  • 86T1D
Genome assembly (visualization)
  • 346hg19
  • 310GRCh38
Lab
  • 252AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 3Bing Ren, UCSD
Audit category:
  • 31inconsistent ontology term
Audit category:
  • 46missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

389 results

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Clear Filters
ChIP-seq
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
hepatocyte12
pancreatic endoderm10
cell line
HepG218
EndoC_BH112
Panc17
GM128781
stem cell
hESC2
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