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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190ChIP-seq
Assay category
  • 190DNA binding
Target of assay
  • 420transcription factor
  • 389histone
  • 389histone modification
  • 198broad histone mark
  • 190narrow histone mark
  • 156control
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 64May, 2021
  • 38August, 2017
  • 15September, 2018
  • 14December, 2017
  • 12October, 2019
  • 11August, 2021
  • 11June, 2019
  • 10November, 2017
  • 8February, 2018
  • 4November, 2019
  • 1January, 2019
  • 1March, 2020
  • 1May, 2019
Available data
  • 172bigWig
  • 163bed narrowPeak
  • 162bam
  • 82fastq
  • 64tagAlign
  • 41bigBed narrowPeak
  • 14bed broadPeak
  • 14bigBed broadPeak
  • 7bed bed3+
Organism
  • 190Homo sapiens
Biosample type
  • tissue
  • 115primary cell
  • 55in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 49epithelium
  • 41pancreas
  • 20connective tissue
  • 16liver
  • 8embryo
  • 8vasculature
  • 7blood vessel
  • 6vein
  • 5kidney
  • 4musculature of body
  • 3brain
  • 2heart
  • 1blood
  • 1bodily fluid
  • 1eye
Project
  • 148AMP
  • 42T1D
Genome assembly (visualization)
  • 172hg19
  • 159GRCh38
Lab
  • 128AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 2Bing Ren, UCSD
Audit category:
  • 17inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

190 results

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Clear Filters
ChIP-seq
primary cell
monocyte41
pancreatic endocrine cell12
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
endothelial cell of umbilical vein6
in vitro differentiated cells
adipocyte16
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm6
hepatocyte5
cell line
HepG29
EndoC_BH16
Panc13
GM128781
stem cell
hESC1
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