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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 420ChIP-seq
Assay category
  • 420DNA binding
Target of assay
  • 420transcription factor
  • 389histone
  • 389histone modification
  • 198broad histone mark
  • 190narrow histone mark
  • 156control
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 244November, 2017
  • 57November, 2018
  • 25December, 2018
  • 24August, 2017
  • 16May, 2021
  • 14January, 2019
  • 11August, 2021
  • 11December, 2017
  • 7October, 2019
  • 5February, 2021
  • 4June, 2019
  • 1May, 2019
  • 1November, 2019
Available data
  • 403bigWig
  • 396bam
  • 394bed narrowPeak
  • 375fastq
  • 340bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 9tagAlign
  • 6bed bed3+
  • 3tar
Organism
  • 420Homo sapiens
Biosample type
  • 361cell line
  • tissue
  • 49in vitro differentiated cells
  • 10primary cell
Organ
  • 299liver
  • 51blood
  • 51bodily fluid
  • 23connective tissue
  • 9epithelium
  • 9kidney
  • 6vasculature
  • 5blood vessel
  • 5heart
  • 4artery
  • 3brain
  • 3embryo
  • 2pancreas
  • 1eye
Project
  • 420AMP
Genome assembly (visualization)
  • 399hg19
  • 355GRCh38
Lab
  • 397AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 17missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

420 results

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Clear Filters
ChIP-seq
cell line
HepG2297
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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