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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
total RNA-seq
4
ATAC-seq
3
Hi-C
1
DNase-seq
Assay category
23
DNA binding
6
Transcription
5
DNA accessibility
3
3D chromatin structure
Target of assay
9
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
257
November, 2017
153
May, 2021
122
February, 2021
86
August, 2021
67
August, 2017
61
November, 2018
43
December, 2017
39
February, 2018
37
October, 2019
28
December, 2018
23
January, 2019
22
February, 2023
21
November, 2019
19
March, 2020
6
November, 2020
5
January, 2018
2
December, 2019
2
March, 2023
1
August, 2018
1
May, 2020
1
October, 2022
Available data
33
bam
24
bigWig
17
bed narrowPeak
10
bigBed narrowPeak
6
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
bigBed broadPeak
1
hdf5
Organism
37
Homo sapiens
Biosample type
238
tissue
30
primary cell
29
cell line
8
in vitro differentiated cells
Organ
15
kidney
14
pancreas
2
connective tissue
2
epithelium
Project
37
AMP
Genome assembly (visualization)
27
hg19
23
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
cell line
Panc1
13
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
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