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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
23
DNA binding
6
Transcription
4
DNA accessibility
Target of assay
9
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
314
November, 2017
117
February, 2021
90
May, 2021
61
November, 2018
54
August, 2017
45
August, 2021
43
December, 2017
39
February, 2018
33
October, 2019
27
December, 2018
23
January, 2019
20
November, 2019
7
March, 2020
Available data
33
bam
24
bigWig
17
bed narrowPeak
10
bigBed narrowPeak
6
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
33
Homo sapiens
Biosample type
186
tissue
31
primary cell
29
cell line
4
in vitro differentiated cells
Organ
15
kidney
14
pancreas
2
epithelium
Project
33
AMP
Genome assembly (visualization)
23
GRCh38
23
hg19
Lab
33
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
Panc1
13
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
cardiomyocytes (cardiac muscle cell)
1
1
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