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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
556
ChIP-seq
231
total RNA-seq
27
ATAC-seq
3
DNase-seq
1
WGBS
Assay category
556
DNA binding
231
Transcription
30
DNA accessibility
1
DNA methylation
Target of assay
386
transcription factor
114
histone
114
histone modification
106
control
89
recombinant protein
70
RNA binding protein
58
narrow histone mark
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
306
November, 2017
117
February, 2021
90
May, 2021
61
November, 2018
42
August, 2017
39
August, 2021
32
December, 2017
31
February, 2018
29
October, 2019
27
December, 2018
23
January, 2019
14
November, 2019
7
March, 2020
Available data
818
bam
726
bigWig
529
fastq
482
bed narrowPeak
355
bigBed narrowPeak
250
tsv
52
bed broadPeak
52
bigBed broadPeak
40
tagAlign
24
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
818
Homo sapiens
Biosample type
1685
tissue
564
cell line
509
primary cell
254
in vitro differentiated cells
2
stem cell
Organ
366
liver
67
heart
66
artery
66
blood vessel
66
vasculature
62
epithelium
60
blood
60
bodily fluid
56
pancreas
47
connective tissue
32
embryo
15
kidney
Project
814
AMP
4
T1D
Genome assembly (visualization)
720
hg19
675
GRCh38
Lab
818
AMP-T2D consortium
Audit category:
157
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
19
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
organ_slims!
gonad
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
818 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
351
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
EndoC_BH1
9
33
1
Panc1
9
1
+ See 7 more…
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
41
4
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
14
4
+ See 24 more…
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