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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
30
total RNA-seq
6
MeRIP-seq
3
ATAC-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
33
DNA binding
30
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
25
histone
25
histone modification
13
broad histone mark
12
narrow histone mark
8
control
3
RNA binding protein
3
nucleotide modification
3
transcription factor
1
chromatin remodeller
Date released
26
February, 2021
May, 2021
19
December, 2017
16
November, 2019
6
November, 2020
5
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
65
bam
61
bigWig
31
tsv
30
bed narrowPeak
19
fastq
15
bigBed narrowPeak
1
bedpe bed3+
1
hic
Organism
76
Homo sapiens
Biosample type
406
primary cell
58
cell line
19
in vitro differentiated cells
15
tissue
Organ
416
liver
96
connective tissue
77
epithelium
71
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
35
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
74
AMP
3
T1D
Genome assembly (visualization)
63
hg19
60
GRCh38
Lab
71
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
59
inconsistent ontology term
Audit category:
1
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
total RNA-seq
MeRIP-seq
ATAC-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
14
29
6
3
2
1
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
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