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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
total RNA-seq
51
ChIP-seq
13
ATAC-seq
1
pCHi-C
Assay category
100
Transcription
51
DNA binding
13
DNA accessibility
Target of assay
24
histone
24
histone modification
16
transcription factor
13
narrow histone mark
11
broad histone mark
11
control
2
RNA binding protein
1
chromatin remodeller
Date released
315
November, 2017
153
May, 2021
122
February, 2021
86
August, 2021
68
August, 2017
61
November, 2018
43
December, 2017
39
February, 2018
38
October, 2019
28
December, 2018
23
January, 2019
22
February, 2023
21
November, 2019
19
March, 2020
6
November, 2020
5
January, 2018
2
December, 2019
2
March, 2023
1
August, 2018
1
May, 2020
1
October, 2022
Available data
160
bam
139
bigWig
100
tsv
48
bed narrowPeak
43
fastq
14
bigBed narrowPeak
13
bed bed3+
8
tagAlign
4
bed bedgraph
1
bed bed3
Organism
165
Homo sapiens
Biosample type
593
tissue
96
cell line
69
in vitro differentiated cells
48
primary cell
3
stem cell
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
45
epithelium
26
pancreas
17
liver
13
embryo
8
connective tissue
Project
165
AMP
Genome assembly (visualization)
157
hg19
152
GRCh38
Lab
165
AMP-T2D consortium
Audit category:
48
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
9
inconsistent control read length
BIOSAMPLE
ASSAY
165 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
hepatocyte
15
pancreatic endoderm
9
adipocyte
4
4
Posterior foregut
5
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