Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
ChIP-seq
249
total RNA-seq
71
ATAC-seq
11
pCHi-C
8
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
560
DNA binding
253
Transcription
74
DNA accessibility
8
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
410
transcription factor
150
histone
150
histone modification
120
control
recombinant protein
76
RNA binding protein
75
broad histone mark
74
narrow histone mark
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
234
November, 2017
153
May, 2021
122
February, 2021
86
August, 2021
66
August, 2017
42
December, 2017
39
February, 2018
38
November, 2018
31
October, 2019
26
December, 2018
22
February, 2023
21
November, 2019
19
March, 2020
17
January, 2019
6
November, 2020
5
January, 2018
2
December, 2019
2
March, 2023
1
August, 2018
1
May, 2020
1
October, 2022
Available data
751
bam
660
bigWig
453
fastq
415
bed narrowPeak
260
bigBed narrowPeak
250
tsv
60
tagAlign
56
bed broadPeak
56
bigBed broadPeak
28
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
930
Homo sapiens
Biosample type
2775
tissue
1087
primary cell
543
cell line
391
in vitro differentiated cells
10
stem cell
Organ
313
liver
102
epithelium
95
connective tissue
95
pancreas
67
heart
66
artery
66
blood vessel
66
vasculature
51
blood
51
bodily fluid
37
embryo
12
kidney
1
adipose tissue
1
mammary gland
Project
923
AMP
9
T1D
2
community
Genome assembly (visualization)
709
hg19
610
GRCh38
4
hg18
Lab
833
AMP-T2D consortium
52
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
200
inconsistent ontology term
2
audit script error
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
29
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
recombinant protein
BIOSAMPLE
ASSAY
934 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
MeRIP-seq
STARR-seq
Capture-C
GRO-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
276
14
1
2
2
2
1
1
EndoC_BH1
15
33
19
1
6
2
3
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
50
1
Panc1
13
1
1
+ See 14 more…
in vitro differentiated cells
adipocyte
65
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 31 more…
See all biosamples
Download