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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
10
total RNA-seq
4
single cell RNA-seq
2
ATAC-seq
1
RRBS
1
pCHi-C
1
small RNA-seq
Assay category
15
Transcription
12
DNA binding
2
DNA accessibility
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
12
June, 2019
7
July, 2019
5
November, 2020
2
April, 2018
2
February, 2021
2
July, 2018
1
May, 2021
Available data
36
bam
32
bigWig
17
bed narrowPeak
15
bigBed narrowPeak
15
tsv
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
31
Homo sapiens
Biosample type
541
tissue
84
in vitro differentiated cells
31
primary cell
1
stem cell
0
cell line
Organ
464
epithelium
436
pancreas
408
liver
95
vasculature
91
blood vessel
76
heart
69
blood
69
bodily fluid
68
artery
45
kidney
31
connective tissue
20
vein
13
brain
13
musculature of body
8
embryo
4
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
30
AMP
1
T1D
Genome assembly (visualization)
27
hg19
26
GRCh38
Lab
30
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
RRBS
pCHi-C
small RNA-seq
primary cell
mesenchymal stem cell
7
osteoblast
5
2
cardiac fibroblast
5
1
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
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