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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
3
ChIP-seq
2
pCHi-C
2
total RNA-seq
Assay category
5
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
4
July, 2019
3
August, 2021
2
February, 2021
2
May, 2021
1
October, 2019
Available data
1101
bam
1045
bigWig
836
fastq
699
bed narrowPeak
464
bigBed narrowPeak
343
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
12
Homo sapiens
Biosample type
29
tissue
25
in vitro differentiated cells
10
primary cell
3
stem cell
2
cell line
Organ
5
epithelium
5
liver
3
brain
2
blood vessel
2
connective tissue
2
vasculature
1
pancreas
Project
12
AMP
Genome assembly (visualization)
12
hg19
4
GRCh38
Lab
10
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
month_released!
May, 2020
BIOSAMPLE
ASSAY
12 results
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Clear Filters
Hi-C
ChIP-seq
pCHi-C
total RNA-seq
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 2 more…
cell line
HepG2
1
Panc1
1
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