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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
29
DNase-seq
Assay category
177
DNA binding
29
DNA accessibility
Target of assay
117
histone
117
histone modification
61
broad histone mark
56
narrow histone mark
54
transcription factor
9
RNA binding protein
6
control
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
84
May, 2021
65
November, 2017
24
June, 2019
15
August, 2017
8
February, 2021
5
October, 2019
4
August, 2021
1
November, 2020
Available data
1191
bam
1135
bigWig
836
fastq
699
bed narrowPeak
464
bigBed narrowPeak
389
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
206
Homo sapiens
Biosample type
415
tissue
138
primary cell
68
cell line
41
in vitro differentiated cells
Organ
65
liver
26
epithelium
18
vasculature
14
blood vessel
11
brain
10
kidney
9
heart
6
artery
6
connective tissue
4
vein
1
eye
1
musculature of body
1
pancreas
Project
122
AMP
84
T1D
Genome assembly (visualization)
195
hg19
182
GRCh38
Lab
122
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
March, 2019
BIOSAMPLE
ASSAY
206 results
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Clear Filters
ChIP-seq
DNase-seq
primary cell
monocyte
84
skeletal muscle myoblast
14
1
hepatocyte
4
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
+ See 19 more…
cell line
HepG2
59
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
Panc1
1
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