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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
615
ChIP-seq
49
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
615
DNA binding
53
DNA accessibility
Target of assay
362
transcription factor
248
histone
248
histone modification
128
broad histone mark
120
narrow histone mark
88
recombinant protein
73
RNA binding protein
31
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
128
May, 2021
56
November, 2018
46
September, 2018
33
August, 2017
33
October, 2019
27
December, 2018
23
June, 2019
15
February, 2021
15
January, 2019
14
August, 2021
12
November, 2019
5
September, 2017
4
May, 2019
1
March, 2020
1
November, 2020
Available data
1101
bam
1045
bigWig
836
fastq
699
bed narrowPeak
464
bigBed narrowPeak
343
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
668
Homo sapiens
Biosample type
769
tissue
403
cell line
265
primary cell
118
in vitro differentiated cells
Organ
309
liver
102
epithelium
88
pancreas
54
blood
54
bodily fluid
27
vasculature
25
blood vessel
20
kidney
15
heart
12
artery
11
connective tissue
11
vein
8
musculature of body
6
brain
2
eye
Project
582
AMP
86
T1D
Genome assembly (visualization)
664
hg19
588
GRCh38
Lab
540
AMP-T2D consortium
114
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
Audit category:
43
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
44
missing controlled_by
Audit category:
29
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
files.file_type!
bed bed3+
month_released!
May, 2020
BIOSAMPLE
ASSAY
668 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
307
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
+ See 5 more…
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
+ See 18 more…
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