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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
263
total RNA-seq
97
single cell RNA-seq
13
ATAC-seq
6
WGBS
5
pCHi-C
2
small RNA-seq
Assay category
362
Transcription
13
DNA accessibility
6
DNA methylation
Date released
85
February, 2021
56
May, 2021
48
July, 2018
46
May, 2020
43
April, 2018
26
September, 2018
17
August, 2021
15
July, 2019
12
February, 2023
9
March, 2020
6
October, 2019
5
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2019
Available data
860
bam
847
bigWig
512
fastq
439
bed narrowPeak
386
tsv
204
bigBed narrowPeak
153
zippedFastqFolder
108
tagAlign
39
bed broadPeak
39
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
8
hic
6
bedpe bed3+
3
cool
2
bed bed3
2
csv
2
hdf5
1
tar
1
txt
1
vcf
Organism
386
Homo sapiens
Biosample type
1053
tissue
267
primary cell
131
in vitro differentiated cells
119
cell line
4
stem cell
Organ
151
epithelium
142
pancreas
56
heart
54
artery
54
blood vessel
54
vasculature
20
liver
15
connective tissue
12
kidney
8
embryo
brain
2
adipose tissue
2
musculature of body
1
mammary gland
1
pericardium
Project
282
AMP
98
T1D
6
HPAP
Genome assembly (visualization)
354
hg19
353
GRCh38
Lab
275
AMP-T2D consortium
96
Kyle Gaulton, UCSD
9
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
Audit category:
56
inconsistent ontology term
month_released!
November, 2017
organ_slims!
brain
BIOSAMPLE
ASSAY
386 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
+ See 58 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
HepG2
14
1
H1-hESC
8
RCC 7860 vector
1
1
+ See 7 more…
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