Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
total RNA-seq
135
ChIP-seq
56
snATAC-seq
47
WGBS
46
ATAC-seq
45
single cell RNA-seq
16
pCHi-C
6
MeRIP-seq
5
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
230
Transcription
135
DNA binding
102
DNA accessibility
47
DNA methylation
5
3D chromatin structure
1
DNA sequencing
Target of assay
117
histone
117
histone modification
65
broad histone mark
52
narrow histone mark
11
transcription factor
10
control
3
nucleotide modification
1
RNA binding protein
Date released
186
May, 2021
134
May, 2022
81
February, 2023
September, 2020
45
February, 2021
45
May, 2020
34
August, 2021
8
January, 2021
7
August, 2020
6
November, 2020
3
March, 2023
3
October, 2022
Available data
236
bigWig
180
bam
134
zippedFastqFolder
128
bed narrowPeak
128
fastq
111
tsv
84
tagAlign
5
hic
4
bedpe bed3+
3
cool
2
bed bed3+
1
vcf
Organism
550
Homo sapiens
Biosample type
505
primary cell
352
tissue
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
139
epithelium
139
pancreas
31
liver
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
Project
265
HPAP
209
T1D
75
AMP
2
community
1
ITG
Genome assembly (visualization)
233
hg19
188
GRCh38
Lab
AMP-T2D consortium
265
Klaus Kaestner, Upenn
244
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
12
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
June, 2018
September, 2020
BIOSAMPLE
ASSAY
552 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
ATAC-seq
single cell RNA-seq
pCHi-C
MeRIP-seq
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte
53
84
1
Langerhans cell
48
45
pancreatic alpha cell
27
31
27
1
pancreatic beta cell
10
16
15
1
exocrine cell
39
+ See 37 more…
cell line
HepG2
9
18
1
2
1
EndoC_BH1
6
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
See all biosamples
Download