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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
746
ChIP-seq
360
total RNA-seq
229
ATAC-seq
144
single cell RNA-seq
56
snATAC-seq
48
WGBS
31
DNase-seq
23
pCHi-C
12
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
746
DNA binding
508
Transcription
316
DNA accessibility
59
DNA methylation
12
3D chromatin structure
1
DNA sequencing
Target of assay
371
transcription factor
260
histone
260
histone modification
132
broad histone mark
128
narrow histone mark
116
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
324
November, 2017
227
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
62
November, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
August, 2021
48
July, 2018
April, 2018
43
October, 2019
31
July, 2019
28
December, 2018
23
January, 2019
16
November, 2019
12
November, 2020
11
March, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
1128
bam
1077
bigWig
798
fastq
686
bed narrowPeak
451
bigBed narrowPeak
346
tsv
153
zippedFastqFolder
120
tagAlign
104
bed broadPeak
104
bigBed broadPeak
38
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
6
hic
5
bedpe bed3+
5
hdf5
3
cool
3
tar
2
bed bed3
2
csv
1
txt
1
vcf
Organism
1681
Homo sapiens
Biosample type
2771
tissue
1023
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
452
epithelium
415
liver
405
pancreas
103
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
connective tissue
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
1145
AMP
324
HPAP
213
T1D
2
community
1
ITG
Genome assembly (visualization)
1098
hg19
945
GRCh38
Lab
1074
AMP-T2D consortium
324
Klaus Kaestner, Upenn
244
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
1
ITG
Audit category:
146
inconsistent ontology term
30
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
April, 2018
organ_slims!
vein
BIOSAMPLE
ASSAY
1685 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
shRNA RNA-seq
...and 2 more
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
9
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
9
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 92 more…
cell line
HepG2
378
14
1
1
2
2
2
EndoC_BH1
15
33
19
1
6
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
+ See 14 more…
See all biosamples
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