Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
655
ChIP-seq
289
total RNA-seq
220
ATAC-seq
187
single cell RNA-seq
48
WGBS
48
snATAC-seq
29
DNase-seq
23
pCHi-C
10
RRBS
9
Hi-C
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
655
DNA binding
480
Transcription
297
DNA accessibility
59
DNA methylation
9
3D chromatin structure
Target of assay
304
transcription factor
252
histone
252
histone modification
130
broad histone mark
122
narrow histone mark
102
control
89
recombinant protein
63
RNA binding protein
21
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
321
November, 2017
227
May, 2021
148
May, 2020
134
May, 2022
94
February, 2023
78
February, 2021
73
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
August, 2021
48
July, 2018
47
November, 2018
43
April, 2018
43
October, 2019
27
July, 2019
16
November, 2019
12
November, 2020
11
March, 2020
7
August, 2020
5
December, 2019
5
January, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
December, 2018
Available data
1026
bam
975
bigWig
773
fastq
599
bed narrowPeak
393
bigBed narrowPeak
318
tsv
153
zippedFastqFolder
110
tagAlign
100
bed broadPeak
100
bigBed broadPeak
31
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
3
hdf5
3
tar
2
bed bed3
2
csv
1
txt
Organism
1532
Homo sapiens
Biosample type
2421
tissue
1045
primary cell
491
cell line
352
in vitro differentiated cells
10
stem cell
Organ
479
epithelium
436
pancreas
380
liver
103
vasculature
blood vessel
79
heart
69
blood
bodily fluid
68
artery
53
kidney
39
connective tissue
22
vein
21
brain
14
musculature of body
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
1004
AMP
324
HPAP
205
T1D
2
community
1
ITG
Genome assembly (visualization)
988
hg19
853
GRCh38
Lab
967
AMP-T2D consortium
324
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
1
ITG
Audit category:
143
inconsistent ontology term
30
audit script error
1
inconsistent replicate
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
August, 2021
organ_slims!
blood vessel
bodily fluid
BIOSAMPLE
ASSAY
1536 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 87 more…
cell line
HepG2
360
5
1
1
2
1
EndoC_BH1
15
33
19
1
6
3
2
1
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
+ See 9 more…
See all biosamples
Download