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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
total RNA-seq
18
ChIP-seq
10
ATAC-seq
6
DNase-seq
2
pCHi-C
2
single cell RNA-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
67
Transcription
18
DNA binding
16
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
5
control
5
transcription factor
4
broad histone mark
4
narrow histone mark
1
RNA binding protein
Date released
69
February, 2021
17
June, 2019
10
July, 2019
6
November, 2020
2
April, 2018
July, 2018
1
May, 2021
Available data
102
bam
88
bigWig
67
tsv
29
bed narrowPeak
15
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
fastq
1
hdf5
Organism
105
Homo sapiens
Biosample type
860
tissue
97
in vitro differentiated cells
66
cell line
39
primary cell
1
stem cell
Organ
452
epithelium
415
liver
401
pancreas
103
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
connective tissue
22
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
104
AMP
1
T1D
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
104
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
month_released!
July, 2018
BIOSAMPLE
ASSAY
105 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
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