Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
390
ChIP-seq
306
total RNA-seq
221
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
494
Transcription
390
DNA binding
311
DNA accessibility
59
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
275
histone
275
histone modification
141
broad histone mark
134
narrow histone mark
116
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
227
May, 2021
148
May, 2020
134
May, 2022
94
February, 2023
80
November, 2017
77
February, 2021
73
September, 2018
59
September, 2020
57
August, 2017
57
October, 2019
51
June, 2019
48
July, 2018
43
April, 2018
37
August, 2021
29
July, 2019
15
November, 2019
12
March, 2020
12
November, 2020
9
January, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2018
5
September, 2017
4
May, 2019
4
October, 2022
3
August, 2018
3
December, 2018
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
765
bam
712
bigWig
491
fastq
332
tsv
329
bed narrowPeak
153
zippedFastqFolder
126
bigBed narrowPeak
113
tagAlign
59
bed broadPeak
59
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
3
cool
2
bed bed3
2
csv
1
tar
1
txt
1
vcf
Organism
1308
Homo sapiens
Biosample type
2611
tissue
1073
primary cell
345
in vitro differentiated cells
239
cell line
10
stem cell
Organ
478
epithelium
436
pancreas
118
liver
97
vasculature
92
blood vessel
74
heart
artery
46
kidney
38
connective tissue
22
vein
18
blood
18
bodily fluid
18
brain
14
musculature of body
8
embryo
4
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
772
AMP
324
HPAP
213
T1D
2
community
1
ITG
Genome assembly (visualization)
731
hg19
617
GRCh38
Lab
712
AMP-T2D consortium
324
Klaus Kaestner, Upenn
244
Kyle Gaulton, UCSD
23
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
1
ITG
Audit category:
134
inconsistent ontology term
31
audit script error
1
inconsistent replicate
Audit category:
45
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2018
organ_slims!
artery
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1312 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
...and 3 more
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 92 more…
cell line
HepG2
81
14
1
1
2
2
2
EndoC_BH1
14
33
19
1
6
3
2
2
1
Panc1
13
1
1
GM12878
9
1
H1-hESC
8
+ See 13 more…
See all biosamples
Download