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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
751
ChIP-seq
350
total RNA-seq
227
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
48
WGBS
27
DNase-seq
21
pCHi-C
12
Hi-C
9
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
small RNA-seq
1
whole genome sequencing assay
Assay category
751
DNA binding
534
Transcription
311
DNA accessibility
58
DNA methylation
12
3D chromatin structure
1
DNA sequencing
Target of assay
370
transcription factor
267
histone
267
histone modification
137
broad histone mark
130
narrow histone mark
115
control
89
recombinant protein
74
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
324
November, 2017
226
May, 2021
148
May, 2020
141
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
59
September, 2020
48
August, 2021
46
July, 2018
41
April, 2018
38
June, 2019
28
December, 2018
23
January, 2019
23
July, 2019
16
November, 2019
12
March, 2020
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
March, 2023
2
October, 2018
1
January, 2018
Available data
1155
bam
1103
bigWig
833
fastq
682
bed narrowPeak
449
bigBed narrowPeak
374
tsv
153
zippedFastqFolder
120
tagAlign
102
bed broadPeak
102
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
7
hic
6
bedpe bed3+
4
hdf5
4
tar
3
cool
2
csv
1
bed bed3
1
txt
1
vcf
Organism
1706
Homo sapiens
Biosample type
2228
tissue
1048
primary cell
660
cell line
297
in vitro differentiated cells
7
stem cell
Organ
485
epithelium
438
pancreas
415
liver
103
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
55
kidney
connective tissue
22
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
1172
AMP
324
HPAP
212
T1D
Genome assembly (visualization)
1124
hg19
967
GRCh38
Lab
1101
AMP-T2D consortium
324
Klaus Kaestner, Upenn
243
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
133
inconsistent ontology term
31
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
March, 2023
organ_slims!
connective tissue
pituitary gland
BIOSAMPLE
ASSAY
1708 results
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table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
small RNA-seq
...and 1 more
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 81 more…
cell line
HepG2
378
14
1
1
2
2
2
EndoC_BH1
15
33
19
1
6
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
+ See 13 more…
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