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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
4
ATAC-seq
2
DNase-seq
1
Hi-C
1
RRBS
1
total RNA-seq
Assay category
66
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
48
histone
48
histone modification
26
narrow histone mark
22
broad histone mark
15
control
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
November, 2017
227
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
August, 2021
48
July, 2018
43
April, 2018
31
July, 2019
28
December, 2018
23
January, 2019
16
November, 2019
12
March, 2020
12
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
73
bam
58
bigWig
58
fastq
45
bed narrowPeak
19
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
75
Homo sapiens
Biosample type
324
tissue
73
in vitro differentiated cells
59
primary cell
16
cell line
Organ
57
pancreas
45
epithelium
Project
75
AMP
Genome assembly (visualization)
61
hg19
55
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
total RNA-seq
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
cell line
EndoC_BH1
13
1
1
1
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