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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
total RNA-seq
27
snATAC-seq
13
ChIP-seq
12
single cell RNA-seq
10
ATAC-seq
6
WGBS
2
pCHi-C
Assay category
91
Transcription
37
DNA accessibility
13
DNA binding
6
DNA methylation
Target of assay
6
transcription factor
4
control
3
histone
3
histone modification
2
broad histone mark
1
RNA binding protein
1
narrow histone mark
Date released
324
November, 2017
227
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
August, 2021
48
July, 2018
April, 2018
31
July, 2019
28
December, 2018
23
January, 2019
16
November, 2019
12
March, 2020
12
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
103
bam
89
bigWig
85
tsv
45
fastq
19
bed narrowPeak
8
tagAlign
4
bigBed narrowPeak
2
bed bed3
2
bed bed3+
Organism
149
Homo sapiens
Biosample type
660
tissue
96
cell line
53
primary cell
26
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
37
epithelium
32
pancreas
5
kidney
3
connective tissue
2
liver
Project
104
AMP
45
HPAP
Genome assembly (visualization)
100
hg19
98
GRCh38
Lab
104
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
29
inconsistent ontology term
27
audit script error
1
inconsistent replicate
month_released!
April, 2018
BIOSAMPLE
ASSAY
149 results
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Clear Filters
total RNA-seq
snATAC-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
kidney epithelial cell
5
osteoblast
1
1
1
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