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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
122
ChIP-seq
41
ATAC-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
Assay category
135
Transcription
122
DNA binding
41
DNA accessibility
1
DNA methylation
Target of assay
119
histone
119
histone modification
66
broad histone mark
53
narrow histone mark
3
control
Date released
324
November, 2017
227
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
59
September, 2020
48
August, 2021
48
July, 2018
44
June, 2019
43
April, 2018
28
December, 2018
28
July, 2019
23
January, 2019
16
November, 2019
12
March, 2020
12
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
176
bigWig
154
bam
128
bed narrowPeak
84
tagAlign
76
fastq
68
tsv
2
bed bed3+
Organism
320
Homo sapiens
Biosample type
294
primary cell
148
in vitro differentiated cells
135
tissue
27
cell line
Organ
59
epithelium
59
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
157
T1D
88
AMP
76
HPAP
Genome assembly (visualization)
189
hg19
154
GRCh38
Lab
191
Kyle Gaulton, UCSD
76
Klaus Kaestner, Upenn
54
AMP-T2D consortium
Audit category:
28
inconsistent ontology term
month_released!
October, 2017
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
321 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
primary cell
monocyte
52
85
13
1
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
pancreatic alpha cell
27
pancreatic beta cell
10
+ See 18 more…
cell line
EndoC_BH1
4
1
16
3
2
1
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