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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
Assay category
134
DNA binding
Target of assay
transcription factor
275
histone
275
histone modification
141
broad histone mark
134
narrow histone mark
118
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
53
May, 2021
22
August, 2017
15
September, 2018
12
October, 2019
11
June, 2019
10
November, 2017
4
August, 2021
4
November, 2019
1
January, 2019
1
March, 2020
1
May, 2019
Available data
131
bigWig
122
bed narrowPeak
120
bam
52
tagAlign
48
fastq
36
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
2
bed bed3+
Organism
134
Homo sapiens
Biosample type
324
tissue
115
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
41
epithelium
40
pancreas
11
liver
8
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
1
blood
1
bodily fluid
1
eye
Project
92
AMP
42
T1D
Genome assembly (visualization)
131
hg19
118
GRCh38
Lab
82
AMP-T2D consortium
50
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
bone element
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
134 results
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Clear Filters
ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
+ See 17 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
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