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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
3
MeRIP-seq
Assay category
133
DNA binding
Target of assay
370
transcription factor
274
histone
274
histone modification
141
broad histone mark
133
narrow histone mark
117
control
89
recombinant protein
74
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
53
May, 2021
22
August, 2017
15
September, 2018
12
October, 2019
10
June, 2019
10
November, 2017
4
August, 2021
4
November, 2019
3
November, 2020
1
January, 2019
1
March, 2020
1
May, 2019
Available data
130
bigWig
121
bed narrowPeak
119
bam
52
tagAlign
48
fastq
35
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
2
bed bed3+
Organism
136
Homo sapiens
Biosample type
324
tissue
114
primary cell
55
in vitro differentiated cells
22
cell line
1
stem cell
Organ
44
epithelium
43
pancreas
11
liver
8
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
1
blood
1
bodily fluid
eye
Project
94
AMP
42
T1D
Genome assembly (visualization)
130
hg19
117
GRCh38
Lab
81
AMP-T2D consortium
50
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
18
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
eye
BIOSAMPLE
ASSAY
136 results
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Clear Filters
ChIP-seq
MeRIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
+ See 16 more…
cell line
EndoC_BH1
6
3
HepG2
9
Panc1
3
GM12878
1
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