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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
15
ChIP-seq
8
ATAC-seq
5
DNase-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
Assay category
57
Transcription
15
DNA binding
13
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
8
control
7
transcription factor
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
Date released
66
February, 2021
9
July, 2019
9
November, 2017
5
June, 2019
Available data
85
bam
78
bigWig
57
tsv
23
bed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
bigBed narrowPeak
9
fastq
8
bed bed3+
6
tagAlign
3
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
89
Homo sapiens
Biosample type
338
tissue
66
cell line
23
primary cell
Organ
485
epithelium
438
pancreas
415
liver
103
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
55
kidney
39
connective tissue
22
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
89
AMP
Genome assembly (visualization)
87
hg19
80
GRCh38
Lab
89
AMP-T2D consortium
BIOSAMPLE
ASSAY
89 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
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