Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
27
ChIP-seq
8
ATAC-seq
6
DNase-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
27
DNA binding
15
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
6
control
6
transcription factor
RNA binding protein
Date released
66
February, 2021
21
October, 2019
5
July, 2019
4
June, 2019
4
November, 2017
1
March, 2020
Available data
96
bam
83
bigWig
54
tsv
31
bed narrowPeak
19
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
6
tagAlign
4
fastq
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
101
Homo sapiens
Biosample type
130
tissue
66
cell line
35
primary cell
Organ
479
epithelium
437
pancreas
361
liver
101
vasculature
96
blood vessel
78
heart
68
artery
59
blood
59
bodily fluid
53
kidney
38
connective tissue
22
vein
18
brain
14
musculature of body
8
embryo
4
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
101
AMP
Genome assembly (visualization)
93
hg19
84
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
101 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
See all biosamples
Download