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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
57
DNA binding
2
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
other context
1
other post-translational modification
Date released
57
November, 2017
1
February, 2021
1
October, 2019
Available data
583
bam
523
bigWig
429
fastq
404
bed narrowPeak
353
bigBed narrowPeak
123
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
6
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
59
Homo sapiens
Biosample type
181
tissue
59
cell line
50
primary cell
6
in vitro differentiated cells
0
stem cell
Organ
58
liver
1
pancreas
Project
59
AMP
Genome assembly (visualization)
59
hg19
45
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
13
inconsistent control read length
target.investigated_as!
other context
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
57
1
Panc1
1
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