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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1246
ChIP-seq
828
total RNA-seq
202
ATAC-seq
174
single cell RNA-seq
172
DNase-seq
87
RNA microarray
30
pCHi-C
24
WGBS
17
snATAC-seq
14
Hi-C
14
small RNA-seq
8
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1246
DNA binding
1018
Transcription
393
DNA accessibility
32
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Target of assay
574
histone modification
573
histone
437
transcription factor
302
narrow histone mark
271
broad histone mark
230
control
89
recombinant protein
84
RNA binding protein
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
614
February, 2021
397
November, 2017
269
August, 2021
254
October, 2019
194
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
80
April, 2019
80
November, 2018
77
February, 2023
70
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
37
March, 2020
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
3
December, 2019
3
January, 2018
3
May, 2021
2
March, 2023
1
November, 2019
1
October, 2022
Available data
1997
bam
1865
bigWig
1244
bed narrowPeak
886
tsv
847
bigBed narrowPeak
591
fastq
251
bed broadPeak
242
tagAlign
228
bigBed broadPeak
179
bed bed3+
152
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
9
hic
8
bedpe bed3+
bed bed3
6
csv
3
tar
1
tagAlign bed3+
1
vcf
Organism
2830
Homo sapiens
Biosample type
2266
tissue
740
primary cell
569
cell line
386
in vitro differentiated cells
10
stem cell
Organ
761
liver
pancreas
547
connective tissue
488
adipose tissue
379
heart
318
kidney
264
brain
199
blood vessel
199
vasculature
154
bone element
139
artery
122
limb
94
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
25
spleen
20
lung
18
ureter
12
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2761
AMP
47
KPMP
19
LungMap
6
T1D
2
community
Genome assembly (visualization)
1881
GRCh38
1807
hg19
Lab
2505
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
6
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
107
inconsistent ontology term
28
inconsistent control
8
audit script error
Audit category:
29
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3
organ_slims!
pancreas
pericardium
BIOSAMPLE
ASSAY
2835 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
FAIRE-seq
HiChIP
MPRA
shRNA RNA-seq
siRNA RNA-seq
...and 1 more
tissue
adipose tissue
2
382
3
1
3
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
+ See 172 more…
cell line
HepG2
378
14
2
1
2
2
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
H1-hESC
8
EndoC_BH1
3
2
+ See 13 more…
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