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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
26
total RNA-seq
16
ATAC-seq
4
pCHi-C
2
Hi-C
1
DNase-seq
Assay category
218
DNA binding
26
Transcription
17
DNA accessibility
2
3D chromatin structure
Target of assay
175
histone
175
histone modification
132
narrow histone mark
43
broad histone mark
36
control
7
recombinant protein
7
transcription factor
Date released
641
February, 2021
273
August, 2021
267
October, 2019
194
May, 2020
118
July, 2018
115
May, 2019
101
February, 2023
89
August, 2017
80
April, 2019
77
July, 2019
76
November, 2017
61
May, 2021
56
November, 2019
51
March, 2020
47
September, 2023
42
May, 2022
40
May, 2024
25
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
10
November, 2020
8
January, 2021
6
October, 2017
4
March, 2019
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
1
October, 2022
Available data
215
bam
180
bigWig
166
bed narrowPeak
55
bigBed narrowPeak
49
tagAlign
12
tsv
6
bed bed3+
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
hdf5
1
hic
1
tagAlign bed3+
Organism
267
Homo sapiens
Biosample type
238
tissue
30
primary cell
29
cell line
8
in vitro differentiated cells
Organ
86
brain
65
limb
40
nerve
24
artery
24
blood vessel
24
vasculature
21
eye
19
kidney
17
pancreas
8
heart
6
liver
4
gonad
4
ovary
2
connective tissue
2
epithelium
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
267
AMP
Genome assembly (visualization)
178
hg19
176
GRCh38
Lab
267
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bed broadPeak
fastq
BIOSAMPLE
ASSAY
267 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
DNase-seq
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
tibial artery
23
1
heart
5
2
1
brain
5
1
+ See 78 more…
cell line
Panc1
13
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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