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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
Assay category
89
DNA binding
Target of assay
652
histone modification
651
histone
411
transcription factor
337
narrow histone mark
314
broad histone mark
270
control
89
RNA binding protein
89
recombinant protein
28
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
30
November, 2017
21
November, 2018
11
October, 2018
6
January, 2019
5
May, 2024
4
April, 2019
4
May, 2019
2
August, 2017
2
December, 2017
2
December, 2018
1
August, 2021
1
November, 2019
Available data
90
bigWig
89
bed narrowPeak
87
bam
81
bigBed narrowPeak
78
fastq
4
bed broadPeak
bigBed broadPeak
2
bed bed3+
1
tar
Organism
89
Homo sapiens
Biosample type
61
cell line
28
tissue
11
in vitro differentiated cells
5
primary cell
Organ
52
liver
10
blood
10
bodily fluid
10
heart
9
pancreas
5
adipose tissue
5
connective tissue
3
blood vessel
3
vasculature
1
artery
1
epithelium
1
kidney
Project
89
AMP
Genome assembly (visualization)
82
GRCh38
80
hg19
Lab
83
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
files.file_type!
bigBed broadPeak
ibed
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
cell line
HepG2
50
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
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