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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
903
total RNA-seq
549
ChIP-seq
169
DNase-seq
46
ATAC-seq
16
small RNA-seq
9
WGBS
2
FAIRE-seq
Assay category
919
Transcription
549
DNA binding
217
DNA accessibility
9
DNA methylation
Target of assay
412
histone
412
histone modification
224
narrow histone mark
188
broad histone mark
114
control
23
transcription factor
9
RNA binding protein
7
recombinant protein
Date released
547
February, 2021
215
October, 2019
193
May, 2020
163
June, 2019
115
May, 2019
114
July, 2018
79
April, 2019
69
November, 2017
64
July, 2019
54
November, 2019
43
May, 2021
16
October, 2018
14
March, 2020
8
August, 2021
Available data
2489
bam
2294
bigWig
1388
bed narrowPeak
1195
tsv
916
bigBed narrowPeak
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
208
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
1694
Homo sapiens
Biosample type
1537
tissue
372
primary cell
157
cell line
155
in vitro differentiated cells
Organ
456
connective tissue
398
adipose tissue
280
pancreas
215
brain
208
liver
198
heart
153
blood vessel
153
vasculature
114
limb
113
kidney
100
artery
66
bone element
51
epithelium
44
musculature of body
42
nerve
18
ureter
8
embryo
8
skeleton
3
eye
1
pituitary gland
Project
1688
AMP
6
T1D
Genome assembly (visualization)
1566
GRCh38
1500
hg19
Lab
1694
AMP-T2D consortium
Audit category:
66
inconsistent ontology term
1
inconsistent replicate
files.file_type!
fastq
BIOSAMPLE
ASSAY
1694 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
liver
147
55
1
islet of Langerhans
169
2
19
bone tissue
58
heart left ventricle
3
34
3
2
2
+ See 138 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
33
15
1
Panc1
13
1
H1-hESC
8
RCC 7860 HIF1a re-expression
1
4
+ See 6 more…
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