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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1162
ChIP-seq
992
total RNA-seq
179
DNase-seq
74
ATAC-seq
18
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
1162
DNA binding
1014
Transcription
257
DNA accessibility
18
DNA methylation
Target of assay
494
histone modification
493
histone
424
transcription factor
257
narrow histone mark
239
control
236
broad histone mark
89
recombinant protein
81
RNA binding protein
26
chromatin remodeller
5
other context
5
other post-translational modification
Date released
547
February, 2021
383
November, 2017
215
October, 2019
193
May, 2020
170
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
87
November, 2018
79
April, 2019
74
October, 2018
64
July, 2019
54
November, 2019
48
December, 2017
43
May, 2021
34
December, 2018
January, 2019
24
May, 2022
15
October, 2017
14
March, 2020
August, 2021
6
April, 2018
6
September, 2017
1
March, 2019
Available data
2451
bam
2246
bigWig
1289
bed narrowPeak
1074
tsv
895
bigBed narrowPeak
774
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
208
bed bed3+
101
txt
26
bed bedMethyl
26
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
Organism
2444
Homo sapiens
Biosample type
1900
tissue
605
primary cell
551
cell line
254
in vitro differentiated cells
3
stem cell
Organ
649
liver
498
connective tissue
492
pancreas
440
adipose tissue
226
brain
198
heart
153
blood vessel
153
vasculature
114
limb
113
kidney
100
artery
66
bone element
51
epithelium
44
musculature of body
42
blood
42
bodily fluid
42
nerve
18
ureter
17
spleen
8
skeleton
3
eye
1
pituitary gland
Project
2445
AMP
6
T1D
Genome assembly (visualization)
2132
GRCh38
2123
hg19
Lab
2426
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
66
inconsistent ontology term
28
inconsistent control
1
inconsistent replicate
Audit category:
38
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
August, 2021
January, 2019
BIOSAMPLE
ASSAY
2451 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
2
381
2
islet of Langerhans
30
266
1
38
6
1
liver
122
147
2
1
bone tissue
58
body of pancreas
35
2
4
4
2
2
+ See 140 more…
cell line
HepG2
359
1
1
smooth muscle cell of the coronary artery
6
52
8
EndoC_BH1
15
33
1
GM12878
42
Panc1
13
1
+ See 6 more…
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