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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
26
ChIP-seq
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
178
DNA accessibility
26
DNA binding
1
3D chromatin structure
Target of assay
13
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
RNA binding protein
Date released
163
June, 2019
24
August, 2017
9
November, 2018
6
October, 2019
2
September, 2017
1
February, 2021
1
May, 2022
Available data
2402
bam
2204
bigWig
1299
bed narrowPeak
1195
tsv
835
bigBed narrowPeak
726
fastq
268
bed broadPeak
258
tagAlign
231
bigBed broadPeak
206
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
2
tar
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
206
Homo sapiens
Biosample type
203
tissue
37
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
36
limb
33
musculature of body
27
brain
27
heart
27
pancreas
18
ureter
7
liver
6
adipose tissue
6
connective tissue
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
1
spleen
Project
206
AMP
Genome assembly (visualization)
204
GRCh38
190
hg19
Lab
206
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bedpe
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
206 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
19
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 42 more…
cell line
Panc1
1
1
HepG2
1
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